Project with the Genomics Platform
To start a project, discuss some ideas, ask questions, or anything else related to the platform, please contact us via genomics@sund.ku.dk. We take meetings more specifically on Mondays and Thursdays. When you need a meeting, feel free to mention some time constraints you have on those days.
To book an instrument on the platform (e.g. bench, Fragment Analyser, 10X), please create an account on PPMS and then email us so we can add the instruments to your account.
Please join the Genomics Platform channel on the reNEW slack. If you don’t have access to the slack yet, please email us.
Direct sequencing
If you are already familiar with our direct sequencing process (i.e. we have discussed it together in a meeting and given you all information so that you can use it), you can:
- get details on the Direct Sequencing Service
- submit a request here
Help on Computing
If you have computing or computational infrastructure questions, if you want to get access to the server danGPUThe, please contact Sen Li. Here are some reference pages for information and convenience:
- DanGPU server for reNEW and CPRGPU for CPR
- Research Management and GDPR at KU
- HPC facilities at KU
- Computerome 2
Available bioinformatics pipelines
Genomics platform maintains several in-house bioinformatics pipelines as well as public pipelines for sequencing read demultiplexing and alignment to a reference genome. Please find more information here
Acknowledgments
Please remember to acknowledge the platform on your publications and other dissemination materials (presentations, posters and similar).
Suggested text for publications: “We thank the staff of the CPR/reNEW Genomics Platform for support: H. Wollmann, M.Michaut, A. Kalvisa. The Novo Nordisk Foundation Center for Stem Cell Medicine (reNEW) is supported by the Novo Nordisk Foundation grant number NNF21CC0073729. The Novo Nordisk Foundation Center for Protein Research (CPR) is supported by the Novo Nordisk Foundation grant number NNF14CC0001”
Please remeber to mention the grant number in your publications.
reNEW only: “The Novo Nordisk Foundation Center for Stem Cell Medicine (reNEW) is supported by a Novo Nordisk Foundation grant number NNF21CC0073729”
CPR only: “The Novo Nordisk Foundation Center for Protein Research (CPR) is supported by a Novo Nordisk Foundation grant number NNF14CC0001”
If Computerome has been used at any point, it should also appear in the acknowledgements: “Data processing and analysis was performed using the DeiC National Life Science Supercomputer at DTU (www.computerome.dk)” as mentioned on the Deic website
Please send us your manuscript before you submit: this gives us an opportunity to review and verify the technical details of the manuscript, as well as track the progress of the various projects the Genomics Platform supports. This also helps reporting our impact.
Go back to the Genomics Platform home